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Among others, it facilitates Bayesian\ninference of the general unified threshold model of survival\n(GUTS). See our companion paper Baudrot and Charles (2021)\n, as well as complementary details in\nBaudrot et al. (2018) and\nDelignette-Muller et al. 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It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary." }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "MinimalWorkingExample.Rmd", "filename": "MinimalWorkingExample.html", "title": "How to generate a Minimal Working Example", "engine": "knitr::rmarkdown", "headings": [ "Please report any issue", "Loading morse and its dependencies (JAGS, C++)", "JAGS", "C++", "Survival analysis", "Fit", "... with plot", "LCx", "MFX", "Predict survival probability", "Predict number of survival" ], "created": "2021-01-27 14:50:02", "modified": "2024-09-19 02:57:07", "commits": 3 }, { "source": "modelling.Rmd", "filename": "modelling.html", "title": "Models in 'morse' package", "engine": "knitr::rmarkdown", "headings": [ "Survival toxicity tests", "Analysis of target time survival toxicity tests", "Modelling", "Inference", "Toxicokinetic-Toxicodynamic modeling", "GUTS Modelling", "GUTS-SD", "GUTS-IT", "For constant concentration exposure", "Reproduction toxicity tests", "Estimation of the effective observation period", "Target time analysis", "References" ], "created": "2022-10-28 10:45:09", "modified": "2026-01-14 08:00:20", "commits": 3 }, { "source": "tutorial.Rmd", "filename": "tutorial.html", "title": "Tutorial", "engine": "knitr::rmarkdown", "headings": [ "Survival data analysis at target time (TT)", "Step 1: check the structure and the data set integrity", "Step 2: create a survData object", "Step 3: visualize your data set", "Step 4: fit an exposure-response model to the survival data at target time", "Step 5: validate the model with a posterior predictive check", "Survival analysis using a toxicokinetic-toxicodynamic (TKTD) model: GUTS", "GUTS model with constant exposure concentrations", "GUTS model \"SD\"", "Fix background mortality", "GUTS model \"IT\"", "GUTS model under time-variable exposure concentration", "Computing prediction", "Robust ODE solver with deSolve", "Removing background mortality in predictions", "Validation criteria: EFSA recommendations", "Computing predictions with number of survivors", "Robust implementation with ODE solver predict_Nsurv_ode", "Validation criteria", "Plot and PPC of predict_Nsurv objects", "Additional options for EFSA user", "Lethal concentration", "Multiplication factors: 'margin of safety'", "Change the level of multiplication factor", "Change the default time of multiplication factor assessment", "Compute a range of multiplication factors", "Multiplication factor when hb is fixed", "Reproduction data analysis at target-time", "Model comparison", "Reproduction data and survival functions" ], "created": "2015-09-01 17:32:49", "modified": "2024-09-19 02:57:07", "commits": 12 } ], "_score": 3.296665190261531, "_indexed": true, "_nocasepkg": "morse", "_universes": [ "virgile-baudrot" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "3.3.5", "date": "2026-05-14T08:31:12.000Z", "distro": "noble", "arch": "aarch64", "commit": "d19063f296c1ab607ec2cccf95cc31eb9ad5193c", "fileid": "215ce6b3d8bee853a9f3d7a23d326b38c3062d401a8d5bc9c3d4ccf0f8b54c04", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/virgile-baudrot/actions/runs/25849985041" }, { "r": "4.7.0", "os": "linux", "version": "3.3.5", "date": "2026-05-14T08:31:18.000Z", "distro": "noble", "arch": "x86_64", "commit": 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